In Pokemon Adventure Yellow Chapter you play as Yellow in the manga to locate the missing Red, who vanished following the battle he fought against Bruno.

Pokemon Adventure Blue Chapter is based on the Pokemon Adventure Manga. The game follows the manga closely with nearly all the events inside.

Pokemon Adventure Green Chapter is based on the manga Pokemon Adventure. Almost all of the events in the game are based on the manga.

In Pokemon Adventure Gold Chapter, you play as Gold from the Pokemon Adventures Manga. One day, Prof. Elm's Totodile was stolen from him.

Pokemon Adventure Red Chapter attempts to follow the Pokemon Adventures manga closely, including nearly every event. Some events were altered to make them long.